Basic Information
Locus ID:
BniB04g005130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 2542945 | 2544141 | - | BniB04g005130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 45,781.65 Da | 53.57 | 100.55 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 17 | 53 | 2.6E-5 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 233 | 353 | 9.5E-24 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 91 | 4.58E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 53 | 2.5E-5 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 2.1E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 131 | 361 | 6.7E-42 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 60 | 9.312009 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62660.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_033147860.1 | putative F-box protein At5g62660 [Brassica rapa] | 0 |
| Q9LV12 | Putative F-box protein At5g62660 OS=Arabidopsis thaliana OX=3702 GN=At5g62660 PE=4 SV=1 | 0 | |
| TrEMBL | A0A078JER2 | BnaA05g37150D protein OS=Brassica napus OX=3708 GN=BnaA05g37150D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |