halophFGD

Basic Information

Locus ID: BniB04g005030.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Belongs to the cysteine synthase cystathionine beta- synthase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	2492503	2497234	-	BniB04g005030.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.52	50,561.46 Da	30.03	95.02	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01561	CBS_like	157	447	2.93677E-141	-
Pfam	PF01282	Ribosomal protein S24e	25	103	2.1E-35	IPR001976
Pfam	PF00291	Pyridoxal-phosphate dependent enzyme	153	438	2.3E-63	IPR001926
SUPERFAMILY	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	148	453	4.45E-99	IPR036052
SUPERFAMILY	SSF54189	Ribosomal proteins S24e, L23 and L15e	6	108	2.55E-36	IPR012678
Gene3D	G3DSA:3.30.70.3370	-	1	132	4.6E-58	-
Gene3D	G3DSA:3.40.50.1100	-	190	292	2.8E-129	IPR036052
Gene3D	G3DSA:3.40.50.1100	-	154	447	2.8E-129	IPR036052
TIGRFAM	TIGR01139	cysK: cysteine synthase A	153	451	3.9E-131	IPR005859
TIGRFAM	TIGR01136	cysKM: cysteine synthase	153	451	7.7E-126	IPR005856
ProSitePatterns	PS00901	Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.	178	196	-	IPR001216
ProSitePatterns	PS00529	Ribosomal protein S24e signature.	66	88	-	IPR018098
Hamap	MF_00545	30S ribosomal protein S24e [rps24e].	4	106	19.838434	IPR001976

Gene Ontology

Biological Process:

GO:0006412 (translation) GO:0006535 (cysteine biosynthetic process from serine)

Molecular Function:

GO:0003735 (structural constituent of ribosome) GO:0004124 (cysteine synthase activity)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K01738 (cysteine synthase [EC:2.5.1.47])

Pathway:

ko00270 (Cysteine and methionine metabolism) map00270 (Cysteine and methionine metabolism) ko00920 (Sulfur metabolism) map00920 (Sulfur metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00021 (Cysteine biosynthesis, serine => cysteine)

Reaction:

R00897 (O-Acetyl-L-serine + Hydrogen sulfide <=> L-Cysteine + Acetate) R03601 (O-Acetyl-L-serine + Hydrogen selenide <=> L-Selenocysteine + Acetate) R04859 (O-Acetyl-L-serine + Thiosulfate + Thioredoxin + H+ <=> L-Cysteine + Sulfite + Thioredoxin disulfide + Acetate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G28020.1	cysteine synthase D2. Encodes cysteine synthase CysD2.
RefSeq	XP_018437970.1	PREDICTED: bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 [Raphanus sativus]
Swiss-Prot	Q9SXS7	Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 OS=Arabidopsis thaliana OX=3702 GN=CYSD2 PE=1 SV=1
TrEMBL	A0A3P6ARJ8	Cysteine synthase OS=Brassica campestris OX=3711 GN=BRAA02T08824Z PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg10947, jg11165, jg12564, jg1935, jg27890, jg29368, jg29369 ... jg33589, jg40939, jg5740
Aizoaceae	Mesembryanthemum crystallinum	6	gene_10065, gene_10066, gene_10067, gene_15354, gene_15770 ... gene_1691
Amaranthaceae	Atriplex hortensis	5	Ah002626, Ah006037, Ah006038, Ah019599, Ah022984
Amaranthaceae	Beta vulgaris	4	BVRB_1g004430, BVRB_3g058740, BVRB_4g082400, BVRB_4g082410
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg16850, Sbi_jg16851, Sbi_jg2524, Sbi_jg2525, Sbi_jg4526 ... Sbi_jg38499, Sbi_jg49423, Sbi_jg59675, Sbi_jg61385, Sbi_jg61386, Sbi_jg6604
Amaranthaceae	Salicornia europaea	5	Seu_jg134, Seu_jg137, Seu_jg15324, Seu_jg24207, Seu_jg5938
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000463, GOSA_00006420, GOSA_00008236, GOSA_00008237 ... GOSA_00025673
Amaranthaceae	Suaeda glauca	8	Sgl01906, Sgl07030, Sgl11053, Sgl16462, Sgl24795, Sgl24796 ... Sgl29943, Sgl29944
Amaranthaceae	Chenopodium album	17	gene:ENSEOMG00000003187, gene:ENSEOMG00000005746 ... gene:ENSEOMG00000008120, gene:ENSEOMG00000011621, gene:ENSEOMG00000012363, gene:ENSEOMG00000013121, gene:ENSEOMG00000014371, gene:ENSEOMG00000021315, gene:ENSEOMG00000021688, gene:ENSEOMG00000029041, gene:ENSEOMG00000029905, gene:ENSEOMG00000030753, gene:ENSEOMG00000034805, gene:ENSEOMG00000040754, gene:ENSEOMG00000042511, gene:ENSEOMG00000046505, gene:ENSEOMG00000048214
Amaranthaceae	Chenopodium quinoa	10	CQ.Regalona.r1.1AG0003000, CQ.Regalona.r1.2BG0025040 ... CQ.Regalona.r1.3AG0010940, CQ.Regalona.r1.3BG0011180, CQ.Regalona.r1.4AG0010060, CQ.Regalona.r1.4AG0010080, CQ.Regalona.r1.4BG0010320, CQ.Regalona.r1.4BG0010330, CQ.Regalona.r1.5AG0012970, CQ.Regalona.r1.8AG0010740
Anacardiaceae	Pistacia vera	9	pistato.v30004660, pistato.v30091760, pistato.v30091770 ... pistato.v30091800, pistato.v30091810, pistato.v30093610, pistato.v30095560, pistato.v30236710, pistato.v30247210
Apiaceae	Apium graveolens	17	Ag11G03327, Ag1G01069, Ag1G01865, Ag1G01866, Ag3G00744 ... Ag5G02505, Ag6G00030, Ag8G01277, AgUnG00465, AgUnG00466, AgUnG01176, AgUnG01177, AgUnG01215, AgUnG01232, AgUnG01496, AgUnG01563, AgUnG01593
Arecaceae	Cocos nucifera	9	COCNU_03G000870, COCNU_03G015010, COCNU_03G015020 ... COCNU_06G013060, COCNU_06G020720, COCNU_07G009830, COCNU_07G009840, COCNU_14G008310, scaffold004063G000070
Arecaceae	Phoenix dactylifera	7	gene-LOC103699290, gene-LOC103709083, gene-LOC103712118 ... gene-LOC103712563, gene-LOC103715024, gene-LOC103715474, gene-LOC103718551
Asparagaceae	Asparagus officinalis	10	AsparagusV1_02.1261.V1.1, AsparagusV1_02.560.V1.1 ... AsparagusV1_03.3211.V1.1, AsparagusV1_04.1864.V1.1, AsparagusV1_04.5.V1.1, AsparagusV1_06.982.V1.1, AsparagusV1_06.989.V1.1, AsparagusV1_06.990.V1.1, AsparagusV1_06.991.V1.1, AsparagusV1_08.1907.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G33462, Ftri18G25685, Ftri2G05102, Ftri4G24675 ... Ftri8G01556
Brassicaceae	Arabidopsis thaliana	9	AT2G43750.1, AT3G03630.1, AT3G04940.1, AT3G22460.1 ... AT3G59760.1, AT3G61440.1, AT4G14880.1, AT5G28020.1, AT5G28030.2
Brassicaceae	Eutrema salsugineum	8	Thhalv10001481m.g.v1.0, Thhalv10004598m.g.v1.0 ... Thhalv10004731m.g.v1.0, Thhalv10005989m.g.v1.0, Thhalv10006044m.g.v1.0, Thhalv10020845m.g.v1.0, Thhalv10021151m.g.v1.0, Thhalv10025734m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp2g20300.v2.2, Sp2g20310.v2.2, Sp3g02610.v2.2 ... Sp3g03760.v2.2, Sp3g20230.v2.2, Sp4g25820.v2.2, Sp5g01960.v2.2, Sp5g03450.v2.2, Sp7g13020.v2.2
Brassicaceae	Brassica nigra	14	BniB01g002410.2N, BniB01g021830.2N, BniB01g058650.2N ... BniB02g079410.2N, BniB04g005030.2N, BniB05g021220.2N, BniB06g062000.2N, BniB06g062010.2N, BniB06g062960.2N, BniB07g020470.2N, BniB07g033170.2N, BniB07g038200.2N, BniB07g060600.2N, BniB08g075560.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G0951, Ceq05G0054, Ceq06G2341, Ceq06G2343, Ceq08G1482 ... Ceq09G1353
Casuarinaceae	Casuarina glauca	9	Cgl02G0979, Cgl05G0048, Cgl06G2461, Cgl06G2463, Cgl06G2464 ... Cgl07G2042, Cgl08G1514, Cgl09G1444, Cgl09G1468
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno01g00660, gene.Cymno05g13930, gene.Cymno07g05820 ... gene.Cymno08g04310, gene.Cymno13g05170
Dunaliellaceae	Dunaliella salina	3	Dusal.0003s00015.v1.0, Dusal.0059s00009.v1.0 ... Dusal.0095s00025.v1.0
Hydrocharitaceae	Thalassia testudinum	8	gene.Thate02g40280, gene.Thate02g40290, gene.Thate03g04340 ... gene.Thate04g00950, gene.Thate04g01770, gene.Thate06g05660, gene.Thate07g17320, gene.Thate07g17330
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7825
Nitrariaceae	Nitraria sibirica	10	evm.TU.LG01.1173, evm.TU.LG03.1429, evm.TU.LG03.1958 ... evm.TU.LG03.2300, evm.TU.LG03.2301, evm.TU.LG03.2302, evm.TU.LG03.247, evm.TU.LG04.851, evm.TU.LG11.1032, evm.TU.LG11.381
Plantaginaceae	Plantago ovata	8	Pov_00016698, Pov_00021311, Pov_00023007, Pov_00025954 ... Pov_00025955, Pov_00033393, Pov_00035348, Pov_00035349
Plumbaginaceae	Limonium bicolor	15	Lb0G37388, Lb0G37389, Lb1G01226, Lb1G06904, Lb1G06905 ... Lb1G06906, Lb1G06907, Lb2G11083, Lb3G18919, Lb4G25916, Lb4G25918, Lb6G31365, Lb8G35896, Lb8G36353, Lb8G36503
Poaceae	Echinochloa crus-galli	24	AH02.1045, AH02.3653, AH05.4144, AH06.257, AH06.258 ... AH06.259, AH07.885, AH09.192, BH02.1073, BH05.4227, BH06.362, BH06.363, BH06.364, BH07.1014, BH09.278, CH02.1230, CH02.2155, CH02.3938, CH05.4459, CH06.354, CH06.355, CH07.765, CH09.1185, CH09.248
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_1AG0005880, gene-QOZ80_1AG0037500 ... gene-QOZ80_1BG0054640, gene-QOZ80_1BG0087600, gene-QOZ80_2AG0106670, gene-QOZ80_2BG0160210, gene-QOZ80_4AG0317880, gene-QOZ80_4AG0326670, gene-QOZ80_4BG0349250, gene-QOZ80_4BG0358690, gene-QOZ80_5AG0398770, gene-QOZ80_5BG0447410, gene-QOZ80_6AG0508830, gene-QOZ80_6AG0508840, gene-QOZ80_6AG0508850, gene-QOZ80_6AG0543100, gene-QOZ80_6BG0461030, gene-QOZ80_6BG0461040, gene-QOZ80_6BG0461050, gene-QOZ80_6BG0496310
Poaceae	Hordeum vulgare	12	HORVU.MOREX.r3.2HG0095670.1, HORVU.MOREX.r3.2HG0167970.1 ... HORVU.MOREX.r3.3HG0232880.1, HORVU.MOREX.r3.3HG0288500.1, HORVU.MOREX.r3.3HG0296440.1, HORVU.MOREX.r3.4HG0371780.1, HORVU.MOREX.r3.5HG0424290.1, HORVU.MOREX.r3.6HG0580230.1, HORVU.MOREX.r3.6HG0601510.1, HORVU.MOREX.r3.7HG0650950.1, HORVU.MOREX.r3.7HG0650960.1, HORVU.MOREX.r3.7HG0717380.2
Poaceae	Lolium multiflorum	15	gene-QYE76_001279, gene-QYE76_004138, gene-QYE76_004170 ... gene-QYE76_018204, gene-QYE76_021637, gene-QYE76_021719, gene-QYE76_027926, gene-QYE76_027927, gene-QYE76_031796, gene-QYE76_034523, gene-QYE76_041525, gene-QYE76_043868, gene-QYE76_049660, gene-QYE76_055827, gene-QYE76_056047
Poaceae	Oryza coarctata	15	Oco01G023090, Oco02G023840, Oco03G005850, Oco04G006070 ... Oco05G023500, Oco06G024410, Oco07G000320, Oco08G005670, Oco11G002330, Oco11G011300, Oco12G000020, Oco12G002310, Oco12G002320, Oco23G010920, Oco24G010730
Poaceae	Oryza sativa	13	LOC_Os01g59920.1, LOC_Os01g74650.1, LOC_Os02g12900.1 ... LOC_Os03g53650.1, LOC_Os04g08350.1, LOC_Os06g05690.1, LOC_Os06g05700.1, LOC_Os06g36820.1, LOC_Os06g36830.1, LOC_Os06g36840.1, LOC_Os06g36850.1, LOC_Os06g36880.1, LOC_Os12g42980.1
Poaceae	Paspalum vaginatum	9	gene-BS78_03G099200, gene-BS78_03G314600 ... gene-BS78_04G091000, gene-BS78_04G260700, gene-BS78_06G027200, gene-BS78_06G092100, gene-BS78_08G160500, gene-BS78_10G043000, gene-BS78_10G043300
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0104229, Pt_Chr0104253, Pt_Chr0206728, Pt_Chr0402180 ... Pt_Chr0402194, Pt_Chr0605381, Pt_Chr0605594, Pt_Chr0704642, Pt_Chr0705073, Pt_Chr0705095
Poaceae	Sporobolus alterniflorus	22	Chr02G025710, Chr02G029090, Chr03G002350, Chr03G018610 ... Chr04G019540, Chr05G003480, Chr05G006710, Chr05G026830, Chr06G020400, Chr08G002720, Chr08G023310, Chr0G010080, Chr0G015620, Chr11G022900, Chr14G001810, Chr19G007260, Chr21G000930, Chr23G018880, Chr26G000830, Chr26G000850, Chr26G006390, Chr27G009570
Poaceae	Thinopyrum elongatum	13	Tel2E01G531200, Tel2E01G890800, Tel3E01G154400 ... Tel3E01G541400, Tel5E01G052200, Tel5E01G482400, Tel6E01G368900, Tel7E01G008300, Tel7E01G207400, Tel7E01G207700, Tel7E01G208000, Tel7E01G620400, Tel7E01G620500
Poaceae	Triticum dicoccoides	14	gene_TRIDC2AG043610, gene_TRIDC2BG046310 ... gene_TRIDC3AG010550, gene_TRIDC3AG048770, gene_TRIDC3BG014300, gene_TRIDC3BG054950, gene_TRIDC4AG056800, gene_TRIDC5AG003030, gene_TRIDC5AG044940, gene_TRIDC5BG063690, gene_TRIDC6BG033500, gene_TRIDC7AG011930, gene_TRIDC7AG050300, gene_TRIDC7BG043460
Poaceae	Triticum aestivum	25	TraesCS2A02G300600.1, TraesCS2B02G316800.1 ... TraesCS2D02G298600.2, TraesCS3A02G087100.1, TraesCS3A02G338600.3, TraesCS3B02G102500.1, TraesCS3B02G370200.3, TraesCS3D02G087300.1, TraesCS3D02G332100.1, TraesCS4A02G401600.1, TraesCS4A02G401700.1, TraesCS5A02G022200.1, TraesCS5A02G300400.1, TraesCS5B02G018700.3, TraesCS5B02G300800.1, TraesCS5D02G027600.1, TraesCS6A02G187300.1, TraesCS6B02G217200.2, TraesCS6D02G174200.1, TraesCS7A02G102700.1, TraesCS7A02G102800.1, TraesCS7A02G359800.1, TraesCS7D02G096700.1, TraesCS7D02G096800.1, TraesCS7D02G363000.1
Poaceae	Zea mays	11	Zm00001eb032380_P001, Zm00001eb083230_P001 ... Zm00001eb088500_P001, Zm00001eb127210_P001, Zm00001eb149880_P001, Zm00001eb333980_P001, Zm00001eb376790_P001, Zm00001eb376890_P001, Zm00001eb376900_P001, Zm00001eb376930_P001, Zm00001eb376970_P001
Poaceae	Zoysia japonica	10	nbis-gene-11622, nbis-gene-32008, nbis-gene-34728 ... nbis-gene-37883, nbis-gene-40410, nbis-gene-47443, nbis-gene-47444, nbis-gene-49003, nbis-gene-57935, nbis-gene-7233
Poaceae	Zoysia macrostachya	9	Zma_g15460, Zma_g19685, Zma_g20884, Zma_g26174, Zma_g26175 ... Zma_g29110, Zma_g31359, Zma_g8862, Zma_g9777
Portulacaceae	Portulaca oleracea	13	evm.TU.LG04.2260, evm.TU.LG05.2294, evm.TU.LG06.49 ... evm.TU.LG07.1064, evm.TU.LG07.1251, evm.TU.LG08.539, evm.TU.LG08.540, evm.TU.LG08.541, evm.TU.LG18.277, evm.TU.LG22.1570, evm.TU.LG22.1571, evm.TU.LG22.1572, evm.TU.LG26.774
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g29420, gene.Posoc03g01560, gene.Posoc05g09750 ... gene.Posoc08g11680, gene.Posoc08g11690, gene.Posoc10g10770
Rhizophoraceae	Bruguiera sexangula	11	evm.TU.Scaffold_1_RagTag.208, evm.TU.Scaffold_1_RagTag.209 ... evm.TU.Scaffold_1_RagTag.210, evm.TU.Scaffold_1_RagTag.497, evm.TU.Scaffold_2_RagTag.1786, evm.TU.Scaffold_2_RagTag.1971, evm.TU.Scaffold_2_RagTag.1972, evm.TU.Scaffold_2_RagTag.1973, evm.TU.Scaffold_6_RagTag.1151, evm.TU.Scaffold_6_RagTag.750, evm.TU.Scaffold_9_RagTag.518
Rhizophoraceae	Carallia pectinifolia	14	nbisL1-mrna-15502, nbisL1-mrna-15945, nbisL1-mrna-21639 ... nbisL1-mrna-3025, nbisL1-mrna-3142, nbisL1-mrna-3385, nbisL1-mrna-3386, nbisL1-mrna-3387, nbisL1-mrna-7666, nbisL1-mrna-8011, nbisL1-mrna-8012, nbisL1-mrna-8014, nbisL1-mrna-8024, nbisL1-mrna-8025
Rhizophoraceae	Ceriops tagal	9	nbisL1-mrna-10390, nbisL1-mrna-13798, nbisL1-mrna-16009 ... nbisL1-mrna-16788, nbisL1-mrna-17331, nbisL1-mrna-347, nbisL1-mrna-42, nbisL1-mrna-43, nbisL1-mrna-9674
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-13752, nbisL1-mrna-13753, nbisL1-mrna-13918 ... nbisL1-mrna-5265, nbisL1-mrna-5527, nbisL1-mrna-7336, nbisL1-mrna-991
Rhizophoraceae	Kandelia candel	8	evm.TU.utg000003l.257, evm.TU.utg000009l.107 ... evm.TU.utg000009l.108, evm.TU.utg000009l.230, evm.TU.utg000011l.454, evm.TU.utg000011l.737, evm.TU.utg000012l.144, evm.TU.utg000012l.145
Rhizophoraceae	Kandelia obovata	8	Maker00005037, Maker00005068, Maker00005904, Maker00007105 ... Maker00007703, Maker00010939, Maker00011246, Maker00017641
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-12805, nbisL1-mrna-12929, nbisL1-mrna-12930 ... nbisL1-mrna-12931, nbisL1-mrna-13564, nbisL1-mrna-15315, nbisL1-mrna-1755, nbisL1-mrna-7815
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-16221, nbisL1-mrna-16222, nbisL1-mrna-16223 ... nbisL1-mrna-16396, nbisL1-mrna-193, nbisL1-mrna-194, nbisL1-mrna-19625, nbisL1-mrna-3474, nbisL1-mrna-4101
Salicaceae	Populus euphratica	11	populus_peu07387, populus_peu13529, populus_peu13530 ... populus_peu13531, populus_peu15859, populus_peu15862, populus_peu16796, populus_peu19283, populus_peu19284, populus_peu27679, populus_peu31653
Solanaceae	Lycium barbarum	7	gene-LOC132609306, gene-LOC132610952, gene-LOC132632838 ... gene-LOC132645237, gene-LOC132645239, gene-LOC132645241, gene-LOC132645564
Solanaceae	Solanum chilense	6	SOLCI000080400, SOLCI002114700, SOLCI005248400 ... SOLCI006483200, SOLCI006483400, SOLCI007393500
Solanaceae	Solanum pennellii	9	gene-LOC107008051, gene-LOC107008428, gene-LOC107025396 ... gene-LOC107027739, gene-LOC107028344, gene-LOC107028355, gene-LOC107028536, gene-LOC107031307, gene-LOC107032363
Tamaricaceae	Reaumuria soongarica	8	STRG.14300_chr08_-, STRG.2130_chr01_+, STRG.32046_chr09_- ... STRG.4019_chr02_-, gene_1416, gene_16997, gene_16998, gene_17964
Tamaricaceae	Tamarix chinensis	7	TC01G0528, TC03G2232, TC06G0828, TC06G0829, TC06G0832 ... TC12G1371, TC12G1860
Zosteraceae	Zostera marina	9	Zosma01g23690.v3.1, Zosma01g23730.v3.1, Zosma01g23740.v3.1 ... Zosma01g36560.v3.1, Zosma02g24250.v3.1, Zosma04g20380.v3.1, Zosma05g32820.v3.1, Zosma06g19590.v3.1, Zosma06g30080.v3.1