Basic Information
Locus ID:
BniB04g004650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 2299083 | 2305287 | - | BniB04g004650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 123,097.84 Da | 36.75 | 82.67 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 904 | 937 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 484 | 0.036 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 658 | 1.92E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 830 | 1081 | 5.04E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 536 | 2.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 537 | 676 | 1.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 741 | 951 | 1.1E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 952 | 1095 | 8.4E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 898 | 937 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 376 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 0.67 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 5.7E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 855 | 895 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1039 | 1080 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 437 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 987 | 1029 | 8.2 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.5E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.025 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 905 | 940 | 10.284687 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.136225 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 584 | 625 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 486 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 905 | 946 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.06044 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1114 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_048602032.1 | topless-related protein 3 [Brassica napus] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A398AFM3 | Topless-related protein 3-like OS=Brassica campestris OX=3711 GN=BRARA_B03566 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology