Basic Information
Locus ID:
BniB04g004410.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 2185386 | 2188721 | + | BniB04g004410.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 78,211.90 Da | 45.51 | 81.96 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 16 | 156 | 4.35226E-49 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 425 | 677 | 1.9E-41 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 120 | 1.51E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 405 | 676 | 1.62E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 495 | 695 | 1.0E-48 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 6 | 154 | 1.7E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 400 | 494 | 1.4E-26 | - |
| SMART | SM00220 | serkin_6 | 422 | 685 | 3.4E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 422 | 685 | 36.202133 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 540 | 552 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 211 | - | - |
| Coils | Coil | Coil | 288 | 308 | - | - |
| Coils | Coil | Coil | 339 | 368 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26150.2 | - | 0 |
| RefSeq | XP_009130043.1 | U-box domain-containing protein 51 [Brassica rapa] | 0 |
| Q9FKG5 | U-box domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=PUB51 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7S7D8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029946 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology