Basic Information
Locus ID:
BniB04g004140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 2060456 | 2063575 | + | BniB04g004140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 111,776.75 Da | 38.80 | 99.71 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 685 | 959 | 5.1E-48 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 85 | 107 | 1.4 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 280 | 339 | 2.6E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 57 | 1.0E-5 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 563 | 579 | 0.17 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 676 | 963 | 3.91E-71 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 279 | 599 | 1.51E-53 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 60 | 374 | 6.59E-63 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 15 | 69 | 1.3E-5 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 70 | 194 | 7.7E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 447 | 2.1E-71 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 448 | 611 | 1.3E-42 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 763 | 985 | 2.3E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 667 | 762 | 7.2E-21 | - |
| SMART | SM00369 | LRR_typ_2 | 83 | 107 | 110.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 683 | 962 | 1.5E-26 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 540 | 564 | 61.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 492 | 516 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 231 | 255 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 108 | 131 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 326 | 350 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 302 | 325 | 29.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 683 | 970 | 36.173866 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 813 | 825 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 689 | 713 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_013614298.1 | PREDICTED: receptor-like protein kinase HSL1 [Brassica oleracea var. oleracea] | 0 |
| C0LGX3 | LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana OX=3702 GN=HSL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9H3U7 | Protein kinase domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q68_00036713 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology