Basic Information
Locus ID:
BniB04g004000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 1968570 | 1970447 | + | BniB04g004000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 35,177.89 Da | 51.13 | 58.43 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 195 | 238 | 1.4E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 60 | 141 | 2.8E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 243 | 301 | 6.1E-27 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 132 | 189 | 9.15E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 244 | 1.74E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 57 | 131 | 7.32E-15 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 267 | 305 | 2.6E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 241 | 4.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 238 | 1.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 239 | 12.297489 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 131 | 195 | 34.073318 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 53 | 129 | 24.276318 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| Coils | Coil | Coil | 33 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_013620507.1 | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Brassica oleracea var. oleracea] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7S8E1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029989 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology