Basic Information
Locus ID:
BniB04g003890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 1923761 | 1927573 | - | BniB04g003890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 93,266.08 Da | 34.50 | 84.31 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04015 | C2_plant_PLD | 5 | 158 | 5.71238E-47 | - |
| Pfam | PF00614 | Phospholipase D Active site motif | 665 | 691 | 1.8E-7 | IPR001736 |
| Pfam | PF00168 | C2 domain | 10 | 137 | 5.1E-9 | IPR000008 |
| Pfam | PF00614 | Phospholipase D Active site motif | 337 | 373 | 1.6E-9 | IPR001736 |
| Pfam | PF12357 | Phospholipase D C terminal | 741 | 812 | 2.0E-22 | IPR024632 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 8 | 159 | 3.78E-12 | IPR035892 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 161 | 439 | 2.62E-31 | - |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 503 | 744 | 2.62E-27 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 210 | 455 | 1.5E-22 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 484 | 714 | 1.4E-22 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 8 | 169 | 1.6E-8 | IPR035892 |
| SMART | SM00155 | pld_4 | 664 | 691 | 1.9E-8 | IPR001736 |
| SMART | SM00239 | C2_3c | 10 | 134 | 6.0E-6 | IPR000008 |
| SMART | SM00155 | pld_4 | 336 | 373 | 0.038 | IPR001736 |
| PIRSF | PIRSF036470 | PLD_plant | 1 | 822 | 0.0 | IPR011402 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 135 | 9.924574 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 664 | 691 | 15.449998 | IPR001736 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 336 | 373 | 10.109599 | IPR001736 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25370.1 | phospholipase D alpha 3. member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response. | 0 |
| RefSeq | XP_013700095.2 | phospholipase D alpha 3 [Brassica napus] | 0 |
| P58766 | Phospholipase D alpha 3 OS=Arabidopsis thaliana OX=3702 GN=PLDALPHA3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A398AJ05 | Phospholipase D OS=Brassica campestris OX=3711 GN=BRARA_B03637 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology