halophFGD

Basic Information

Locus ID: BniB04g003440.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: cysteine-rich repeat secretory protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	1691698	1692909	-	BniB04g003440.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.65	46,051.99 Da	35.87	86.77	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	9	44	1.5E-7	IPR001810
Pfam	PF03478	Protein of unknown function (DUF295)	319	376	2.1E-12	IPR005174
SUPERFAMILY	SSF81383	F-box domain	4	99	6.28E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	8	46	1.2E-6	-
SMART	SM00256	fbox_2	12	51	0.0017	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G24080.1	Protein of unknown function (DUF295).
RefSeq	XP_006394690.1	F-box protein At5g25290 [Eutrema salsugineum]
Swiss-Prot	Q4PSE7	F-box protein At5g25290 OS=Arabidopsis thaliana OX=3702 GN=At5g25290 PE=2 SV=1
TrEMBL	A0A8X7V688	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029902 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	36	AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... AT1G67160.1, AT1G69090.1, AT2G03560.1, AT2G03580.1, AT2G03610.1, AT2G04810.1, AT2G04830.1, AT2G04840.1, AT2G05970.1, AT2G14290.1, AT2G14500.1, AT2G24080.1, AT2G33190.1, AT2G33200.1, AT3G03726.1, AT3G03730.1, AT3G22345.1, AT4G10820.1, AT4G12810.1, AT4G12820.1, AT4G14165.1, AT4G17565.1, AT4G22060.1, AT4G22165.1, AT4G22170.1, AT4G22180.1, AT4G22660.1, AT5G14160.1, AT5G25290.1, AT5G25300.1, AT5G38270.1, AT5G66830.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... Thhalv10003406m.g.v1.0, Thhalv10005536m.g.v1.0, Thhalv10005623m.g.v1.0, Thhalv10005703m.g.v1.0, Thhalv10009751m.g.v1.0, Thhalv10009801m.g.v1.0, Thhalv10010442m.g.v1.0, Thhalv10013780m.g.v1.0, Thhalv10013894m.g.v1.0, Thhalv10015550m.g.v1.0, Thhalv10015724m.g.v1.0, Thhalv10017543m.g.v1.0, Thhalv10017659m.g.v1.0, Thhalv10017793m.g.v1.0, Thhalv10022303m.g.v1.0, Thhalv10025429m.g.v1.0, Thhalv10025466m.g.v1.0, Thhalv10026778m.g.v1.0, Thhalv10027445m.g.v1.0, Thhalv10027492m.g.v1.0, Thhalv10028086m.g.v1.0, Thhalv10028141m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... Sp4g15490.v2.2
Brassicaceae	Brassica nigra	32	BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... BniB02g015870.2N, BniB02g079660.2N, BniB02g079670.2N, BniB02g079680.2N, BniB02g079710.2N, BniB04g003420.2N, BniB04g003440.2N, BniB04g020100.2N, BniB04g022220.2N, BniB05g014900.2N, BniB05g014910.2N, BniB05g014920.2N, BniB05g014930.2N, BniB05g018820.2N, BniB05g037380.2N, BniB05g045930.2N, BniB05g075540.2N, BniB06g013440.2N, BniB06g022380.2N, BniB06g022390.2N, BniB06g022410.2N, BniB07g060540.2N, BniB08g005890.2N, BniB08g010430.2N, BniB08g013090.2N, BniB08g013100.2N, BniB08g021060.2N, BniB08g034830.2N, BniB08g034840.2N