Basic Information
Locus ID:
BniB04g002420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MADS-box protein SOC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 1171910 | 1175347 | - | BniB04g002420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 24,738.03 Da | 47.25 | 89.04 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 78 | 2.51323E-43 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 9.3E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 87 | 170 | 8.0E-21 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 82 | 6.93E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 4.8E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 3.1E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.113445 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 186 | 13.010503 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 7.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 7.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 7.8E-31 | IPR002100 |
| Coils | Coil | Coil | 143 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_013618549.1 | PREDICTED: MADS-box protein SOC1 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V3V1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029793 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology