Basic Information
Locus ID:
BniB04g002170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBC3
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 1040180 | 1040944 | - | BniB04g002170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 17,134.22 Da | 73.17 | 74.80 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 145 | 3.91432E-71 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 144 | 3.3E-51 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 148 | 2.75E-61 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 150 | 4.8E-65 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 150 | 4.0E-64 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 150 | 57.668385 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 77 | 92 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62540.1 | ubiquitin-conjugating enzyme 3. Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process. | 0 |
| RefSeq | XP_018458197.1 | PREDICTED: ubiquitin-conjugating enzyme E2 3 [Raphanus sativus] | 0 |
| P42746 | Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana OX=3702 GN=UBC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7S9F9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029846 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology