Basic Information
Locus ID:
BniB04g002080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is F-box and associated interaction domains-containing protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 997014 | 997310 | - | BniB04g002080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 11,252.86 Da | 45.92 | 111.21 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 42 | 1.8E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 46 | 1.44E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 48 | 1.2E-7 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 8.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 50 | 8.808615 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018458189.1 | PREDICTED: putative F-box protein At1g32420 [Raphanus sativus] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7S854 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029854 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19492 |
| Brassicaceae | Brassica nigra | 1 | BniB04g002080.2N |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG01.2444, evm.TU.LG01.2445, evm.TU.LG01.2446 ... |