Basic Information
Locus ID:
BniB04g001790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 848724 | 853756 | + | BniB04g001790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 121,574.94 Da | 45.63 | 92.63 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 773 | 1069 | 1.54749E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 772 | 807 | 8.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1033 | 1069 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 510 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 290 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 546 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 817 | 853 | 0.046 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 251 | 552 | 5.49E-49 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 768 | 1069 | 2.38E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1031 | 1074 | 5.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 763 | 1030 | 1.3E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 244 | 546 | 8.9E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 298 | 337 | 4.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 769 | 808 | 2.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 291 | 5.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 422 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 814 | 853 | 1.7E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 614 | 672 | 15.0 | IPR006595 |
| SMART | SM00320 | WD40_4 | 515 | 555 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1030 | 1070 | 1.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 856 | 895 | 27.0 | IPR001680 |
| SMART | SM00668 | ctlh | 99 | 153 | 0.19 | IPR006595 |
| SMART | SM00320 | WD40_4 | 984 | 1026 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 511 | 1.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 821 | 858 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 346 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 104 | 153 | 8.808371 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1037 | 1074 | 15.688272 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 259 | 293 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 776 | 812 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 337 | 8.676514 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1037 | 1074 | 14.239212 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 293 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 821 | 862 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 776 | 817 | 13.181907 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 795 | 809 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 278 | 292 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 498 | 512 | 2.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1057 | 1071 | 2.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 795 | 809 | 2.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_018433905.1 | PREDICTED: uncharacterized WD repeat-containing protein C343.04c-like [Raphanus sativus] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S7L3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029697 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology