Basic Information
Locus ID:
BniB03g069580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin protein ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 54154105 | 54155292 | + | BniB03g069580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 45,028.90 Da | 68.83 | 84.13 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 125 | 168 | 5.92894E-20 | - |
| Pfam | PF13639 | Ring finger domain | 125 | 168 | 9.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 173 | 1.04E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 175 | 1.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 167 | 5.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 168 | 12.754832 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013614010.1 | PREDICTED: putative RING-H2 finger protein ATL12 [Brassica oleracea var. oleracea] | 0 |
| Q9SL78 | Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7W5S1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016795 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology