halophFGD

Basic Information

Locus ID: BniB03g068000.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Short Name: FTSH6

Description: Belongs to the AAA ATPase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B3	52738521	52739559	+	BniB03g068000.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.72	34,366.75 Da	47.27	83.45	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	147	290	4.7E-35	IPR006527
SUPERFAMILY	SSF81383	F-box domain	1	89	1.23E-6	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	51	269	3.5E-31	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03798 (cell division protease FtsH [EC:3.4.24.-])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G19470.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_013727521.1	putative F-box protein At3g23420 [Brassica napus]
Swiss-Prot	Q8LCE9	F-box protein At3g19470 OS=Arabidopsis thaliana OX=3702 GN=At3g19470 PE=2 SV=1
TrEMBL	A0A8X7W6W3	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016688 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Cocos nucifera	1	COCNU_01G005860
Brassicaceae	Arabidopsis thaliana	81	AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... AT1G65990.1, AT2G04920.1, AT2G07140.1, AT2G11200.1, AT2G17830.1, AT2G18780.1, AT2G24510.1, AT2G27520.1, AT2G38590.1, AT3G03405.1, AT3G04250.1, AT3G16020.1, AT3G16740.1, AT3G16820.1, AT3G16880.1, AT3G17265.1, AT3G17270.1, AT3G17280.1, AT3G17320.1, AT3G17400.1, AT3G17480.1, AT3G17490.1, AT3G17500.1, AT3G17530.1, AT3G17540.1, AT3G17560.1, AT3G17570.1, AT3G17620.1, AT3G18120.1, AT3G18320.1, AT3G18330.1, AT3G18910.1, AT3G18980.1, AT3G19410.1, AT3G19470.1, AT3G19560.1, AT3G20690.1, AT3G20700.1, AT3G20710.1, AT3G21120.1, AT3G21130.1, AT3G21170.1, AT3G22350.1, AT3G22421.1, AT3G22700.1, AT3G22710.1, AT3G22720.1, AT3G22730.1, AT3G22770.1, AT3G22870.1, AT3G22940.1, AT3G23260.1, AT3G23420.1, AT3G23633.1, AT3G23680.1, AT3G23685.1, AT3G24580.1, AT3G24700.1, AT3G25090.1, AT3G25460.1, AT3G44120.1, AT3G49980.1, AT4G09870.1, AT4G10190.1, AT4G10740.1, AT4G33290.1, AT5G36190.1, AT5G36200.1, AT5G36730.1, AT5G36820.1, AT5G41490.1, AT5G41500.1, AT5G41510.1, AT5G42460.1, AT5G47300.1, AT5G51000.1, AT5G62830.1
Brassicaceae	Eutrema salsugineum	96	Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... Thhalv10000599m.g.v1.0, Thhalv10000604m.g.v1.0, Thhalv10001129m.g.v1.0, Thhalv10001171m.g.v1.0, Thhalv10001844m.g.v1.0, Thhalv10002009m.g.v1.0, Thhalv10002791m.g.v1.0, Thhalv10002795m.g.v1.0, Thhalv10002817m.g.v1.0, Thhalv10002867m.g.v1.0, Thhalv10002868m.g.v1.0, Thhalv10002911m.g.v1.0, Thhalv10002915m.g.v1.0, Thhalv10002939m.g.v1.0, Thhalv10002957m.g.v1.0, Thhalv10002977m.g.v1.0, Thhalv10002981m.g.v1.0, Thhalv10002985m.g.v1.0, Thhalv10002999m.g.v1.0, Thhalv10003000m.g.v1.0, Thhalv10003040m.g.v1.0, Thhalv10003050m.g.v1.0, Thhalv10003090m.g.v1.0, Thhalv10003102m.g.v1.0, Thhalv10003403m.g.v1.0, Thhalv10005679m.g.v1.0, Thhalv10006371m.g.v1.0, Thhalv10007777m.g.v1.0, Thhalv10009814m.g.v1.0, Thhalv10012007m.g.v1.0, Thhalv10012157m.g.v1.0, Thhalv10015377m.g.v1.0, Thhalv10015387m.g.v1.0, Thhalv10015418m.g.v1.0, Thhalv10015430m.g.v1.0, Thhalv10015464m.g.v1.0, Thhalv10015770m.g.v1.0, Thhalv10015830m.g.v1.0, Thhalv10015889m.g.v1.0, Thhalv10017529m.g.v1.0, Thhalv10017637m.g.v1.0, Thhalv10020932m.g.v1.0, Thhalv10020934m.g.v1.0, Thhalv10020988m.g.v1.0, Thhalv10021906m.g.v1.0, Thhalv10021918m.g.v1.0, Thhalv10021925m.g.v1.0, Thhalv10021928m.g.v1.0, Thhalv10021950m.g.v1.0, Thhalv10021953m.g.v1.0, Thhalv10021978m.g.v1.0, Thhalv10021981m.g.v1.0, Thhalv10022006m.g.v1.0, Thhalv10022064m.g.v1.0, Thhalv10022067m.g.v1.0, Thhalv10022074m.g.v1.0, Thhalv10022075m.g.v1.0, Thhalv10022089m.g.v1.0, Thhalv10022091m.g.v1.0, Thhalv10022121m.g.v1.0, Thhalv10022140m.g.v1.0, Thhalv10022141m.g.v1.0, Thhalv10022145m.g.v1.0, Thhalv10022148m.g.v1.0, Thhalv10022163m.g.v1.0, Thhalv10022189m.g.v1.0, Thhalv10022250m.g.v1.0, Thhalv10022266m.g.v1.0, Thhalv10022270m.g.v1.0, Thhalv10022281m.g.v1.0, Thhalv10022288m.g.v1.0, Thhalv10022315m.g.v1.0, Thhalv10022361m.g.v1.0, Thhalv10022364m.g.v1.0, Thhalv10022368m.g.v1.0, Thhalv10022377m.g.v1.0, Thhalv10022393m.g.v1.0, Thhalv10022401m.g.v1.0, Thhalv10022418m.g.v1.0, Thhalv10022425m.g.v1.0, Thhalv10022798m.g.v1.0, Thhalv10023157m.g.v1.0, Thhalv10026768m.g.v1.0, Thhalv10026986m.g.v1.0, Thhalv10027003m.g.v1.0, Thhalv10027013m.g.v1.0, Thhalv10027248m.g.v1.0, Thhalv10027355m.g.v1.0, Thhalv10027376m.g.v1.0, Thhalv10027471m.g.v1.0, Thhalv10027516m.g.v1.0, Thhalv10027561m.g.v1.0, Thhalv10028127m.g.v1.0, Thhalv10029509m.g.v1.0
Brassicaceae	Schrenkiella parvula	15	Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... Sp3g15660.v2.2, Sp3g15690.v2.2, Sp3g17310.v2.2, Sp3g18730.v2.2, Sp3g19130.v2.2, Sp3g21250.v2.2, Sp3g22340.v2.2, Sp4g04370.v2.2, Sp4g16570.v2.2, Sp4g17180.v2.2, Sp7g11920.v2.2, Sp7g29450.v2.2
Brassicaceae	Brassica nigra	83	BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... BniB01g042490.2N, BniB01g042510.2N, BniB01g042540.2N, BniB01g042580.2N, BniB01g042590.2N, BniB01g042610.2N, BniB01g043040.2N, BniB01g043050.2N, BniB01g043060.2N, BniB01g043110.2N, BniB01g044140.2N, BniB01g044150.2N, BniB01g045040.2N, BniB01g047300.2N, BniB01g047310.2N, BniB01g047900.2N, BniB01g049140.2N, BniB01g049150.2N, BniB02g010180.2N, BniB02g010740.2N, BniB02g047620.2N, BniB02g064000.2N, BniB03g024790.2N, BniB03g025020.2N, BniB03g039860.2N, BniB03g049230.2N, BniB03g049760.2N, BniB03g068000.2N, BniB04g038530.2N, BniB04g038580.2N, BniB04g038590.2N, BniB04g038600.2N, BniB04g038610.2N, BniB04g038620.2N, BniB04g043970.2N, BniB04g056000.2N, BniB04g056010.2N, BniB05g004620.2N, BniB05g007210.2N, BniB05g007230.2N, BniB05g017560.2N, BniB05g019400.2N, BniB05g019430.2N, BniB05g025140.2N, BniB05g038570.2N, BniB06g008450.2N, BniB06g026860.2N, BniB06g027320.2N, BniB06g027400.2N, BniB06g027440.2N, BniB06g028000.2N, BniB06g048280.2N, BniB07g002470.2N, BniB07g002490.2N, BniB07g002510.2N, BniB07g023750.2N, BniB07g024380.2N, BniB07g024430.2N, BniB07g029280.2N, BniB07g029470.2N, BniB07g029780.2N, BniB07g030600.2N, BniB07g031750.2N, BniB07g048390.2N, BniB07g048640.2N, BniB07g048810.2N, BniB07g050430.2N, BniB07g051260.2N, BniB07g052390.2N, BniB07g052550.2N, BniB07g052760.2N, BniB07g052960.2N, BniB07g053790.2N, BniB07g057530.2N, BniB07g057550.2N, BniB08g006680.2N, BniB08g006690.2N, BniB08g019980.2N, BniB08g038820.2N, BniS06172g150.2N