Basic Information
Locus ID:
BniB03g067570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 52420368 | 52420913 | + | BniB03g067570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.98 | 20,778.31 Da | 65.80 | 95.80 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 107 | 150 | 1.93045E-15 | - |
| Pfam | PF13639 | Ring finger domain | 106 | 150 | 4.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 156 | 2.1E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 155 | 5.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 108 | 149 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 150 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018438370.1 | PREDICTED: RING-H2 finger protein ATL56 [Raphanus sativus] | 0 |
| Q9ZV51 | RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W5G9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology