Basic Information
Locus ID:
BniB03g066180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK16
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 50668013 | 50670981 | - | BniB03g066180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 65,038.40 Da | 37.05 | 77.18 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 110 | 370 | 1.31773E-126 | - |
| Pfam | PF00069 | Protein kinase domain | 111 | 371 | 1.5E-68 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 498 | 552 | 6.5E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 418 | 479 | 6.8E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 400 | 554 | 7.86E-34 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 104 | 392 | 7.42E-81 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 392 | 551 | 9.7E-41 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 104 | 196 | 1.5E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 197 | 391 | 3.8E-55 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 412 | 481 | 9.7E-41 | - |
| SMART | SM00054 | efh_1 | 455 | 483 | 0.11 | IPR002048 |
| SMART | SM00054 | efh_1 | 497 | 525 | 0.13 | IPR002048 |
| SMART | SM00220 | serkin_6 | 111 | 371 | 7.1E-91 | IPR000719 |
| SMART | SM00054 | efh_1 | 418 | 446 | 0.023 | IPR002048 |
| SMART | SM00054 | efh_1 | 527 | 555 | 0.019 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 531 | 558 | 10.105932 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 414 | 449 | 11.612284 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 111 | 371 | 48.45631 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 493 | 528 | 12.142296 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 451 | 486 | 11.75176 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 464 | 476 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 117 | 141 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 536 | 548 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 506 | 518 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 233 | 245 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 427 | 439 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17890.1 | calcium-dependent protein kinase 16. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_018435882.1 | PREDICTED: calcium-dependent protein kinase 16-like [Raphanus sativus] | 0 |
| Q7XJR9 | Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana OX=3702 GN=CPK16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B6S5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17210, jg39605 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24109 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026857 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130630 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13703, Sbi_jg52207 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9638 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017658 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33241, Sgl38630, Sgl38691 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000700, gene:ENSEOMG00000001640 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020130, CQ.Regalona.r1.6BG0021200 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30209960, pistato.v30210060 |
| Apiaceae | Apium graveolens | 3 | Ag4G00403, Ag5G00559, Ag9G00692 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G001710, COCNU_09G001820, COCNU_10G001220 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696863, gene-LOC103703874, gene-LOC103719894 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1457.V1.1, AsparagusV1_04.1240.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri13G29483, Ftri17G19086, Ftri18G19133, Ftri1G26565 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G17890.1, AT4G36070.2, AT5G66210.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003969m.g.v1.0, Thhalv10022615m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g30480.v2.2, Sp7g33850.v2.2, SpUn0281_0010.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g014340.2N, BniB02g087840.2N, BniB03g066180.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0177 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0191 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4417, nbisL1-mrna-6982 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2767 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020420 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06163, Lb8G36252 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.903, AH07.253, BH03.1035, BH07.318, CH03.1192 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0100290, gene-QOZ80_2BG0153620 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0551960.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019924 |
| Poaceae | Oryza coarctata | 3 | Oco03G001460, Oco04G001360, Oco13G005940 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g03410.1, LOC_Os07g22710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G082000, gene-BS78_04G022100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201281, Pt_Chr0303945 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G035630, Chr24G005890, Chr28G005610 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G435600, Tel6E01G191600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG035040, gene_TRIDC6AG011450 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G239900.1, TraesCS2D02G245700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb094770_P001, Zm00001eb230910_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33822, nbis-gene-38849 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12122, Zma_g6305 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1551, evm.TU.LG05.350, evm.TU.LG12.224 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g07980, gene.Posoc10g10160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-259 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14318 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5899 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1150 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006806 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6558 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2420 |
| Salicaceae | Populus euphratica | 2 | populus_peu14132, populus_peu23259 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617504, gene-LOC132622177 |
| Solanaceae | Solanum chilense | 2 | SOLCI006618000, SOLCI006856900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009312, gene-LOC107014904 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16503_chr06_+, STRG.8978_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC09G0136, TC11G0728 |
| Zosteraceae | Zostera marina | 3 | Zosma01g26440.v3.1, Zosma03g10680.v3.1, Zosma05g27830.v3.1 |