Basic Information
Locus ID:
BniB03g065500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 49736440 | 49738350 | + | BniB03g065500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 71,209.75 Da | 42.05 | 92.59 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 436 | 461 | 1.3E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 397 | 425 | 9.1E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 573 | 601 | 0.082 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 190 | 220 | 0.012 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 292 | 321 | 0.2 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 499 | 548 | 4.0E-9 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 121 | 166 | 0.005 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 84 | 110 | 0.017 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 223 | 268 | 2.7E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 325 | 372 | 4.1E-16 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 464 | 629 | 8.1E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 37 | 168 | 2.4E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 253 | 317 | 7.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 392 | 463 | 5.1E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 318 | 391 | 8.3E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 169 | 252 | 1.3E-19 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 226 | 253 | 7.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 436 | 461 | 3.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 398 | 425 | 6.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 363 | 389 | 1.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 538 | 570 | 3.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 85 | 118 | 6.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 327 | 361 | 1.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 573 | 606 | 1.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 190 | 224 | 7.5E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | 8.911594 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 500 | 534 | 9.63504 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 570 | 604 | 10.47906 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 535 | 569 | 9.996763 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 82 | 116 | 8.549871 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | 11.728648 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 395 | 425 | 9.076014 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 224 | 258 | 10.818861 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 188 | 222 | 10.062531 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | 12.912469 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17525.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_013744624.1 | pentatricopeptide repeat-containing protein At2g17525, mitochondrial [Brassica napus] | 0 |
| Q84VG6 | Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g17525 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7W594 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016519 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34662 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6497 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018177 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15202, Sbi_jg56024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26503 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027749 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02222, Sgl07378 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030064, gene:ENSEOMG00000045211 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009180, CQ.Regalona.r1.3BG0009360 |
| Apiaceae | Apium graveolens | 1 | Ag3G01768 |
| Arecaceae | Cocos nucifera | 1 | scaffold020636G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103774 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.429.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22357 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g065500.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g13010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2888 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013333 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb8G36056, Lb8G36059 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1654, evm.TU.LG11.1007 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2202 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11639 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.559 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008315 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23116 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23702 |
| Salicaceae | Populus euphratica | 1 | populus_peu14041 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610154 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031224 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25127_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0871 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23520.v3.1 |