Basic Information
Locus ID:
BniB03g064170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 48078866 | 48080879 | - | BniB03g064170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 47,243.99 Da | 36.63 | 72.97 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 246 | 0.0021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 252 | 289 | 0.0044 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 18 | 87 | 1.7E-21 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 391 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 333 | 3.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 396 | 2.93E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 414 | 4.5E-129 | IPR015943 |
| SMART | SM00320 | WD40_4 | 249 | 289 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 5.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 197 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 333 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 352 | 392 | 3.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 213 | 251 | 9.151057 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 256 | 291 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 213 | 255 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 359 | 393 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 300 | 335 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 206 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 300 | 335 | 10.891048 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 199 | 8.940149 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 320 | 334 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 184 | 198 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 184 | 198 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 320 | 334 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 276 | 290 | 1.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 418 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_009121185.1 | WD-40 repeat-containing protein MSI2 [Brassica rapa] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W6Z3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016401 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology