Basic Information
Locus ID:
BniB03g063090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
SMG1
Description:
Belongs to the PI3 PI4-kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 46106846 | 46120180 | + | BniB03g063090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 402,212.00 Da | 45.54 | 97.27 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05170 | PIKKc_SMG1 | 2004 | 2310 | 1.27499E-166 | IPR039414 |
| Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 2035 | 2309 | 4.7E-42 | IPR000403 |
| Pfam | PF15785 | Serine/threonine-protein kinase smg-1 | 697 | 1198 | 3.4E-40 | IPR031559 |
| Pfam | PF02260 | FATC domain | 3567 | 3595 | 1.5E-14 | IPR003152 |
| SUPERFAMILY | SSF48371 | ARM repeat | 83 | 775 | 1.39E-12 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1978 | 2312 | 1.84E-69 | IPR011009 |
| SUPERFAMILY | SSF48371 | ARM repeat | 296 | 1822 | 7.13E-9 | IPR016024 |
| Gene3D | G3DSA:3.30.1010.10 | - | 1946 | 2091 | 5.8E-21 | - |
| Gene3D | G3DSA:1.10.1070.11 | - | 2172 | 2350 | 1.2E-41 | IPR036940 |
| SMART | SM01343 | FATC_2 | 3564 | 3596 | 3.0E-15 | IPR003152 |
| SMART | SM00146 | pi3k_hr1_6 | 2034 | 2357 | 9.4E-42 | IPR000403 |
| ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 2033 | 2303 | 37.3265 | IPR000403 |
| ProSiteProfiles | PS51190 | FATC domain profile. | 3564 | 3596 | 16.655411 | IPR003152 |
| ProSitePatterns | PS00916 | Phosphatidylinositol 3- and 4-kinases signature 2. | 2203 | 2223 | - | IPR018936 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3520 | 3539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| Coils | Coil | Coil | 1595 | 1615 | - | - |
| Coils | Coil | Coil | 2588 | 2615 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50030.2 | target of rapamycin. Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. | 0 |
| RefSeq | XP_048593204.1 | serine/threonine-protein kinase SMG1 isoform X1 [Brassica napus] | 0 |
| C5J7W8 | Serine/threonine-protein kinase SMG1 OS=Danio rerio OX=7955 GN=smg1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6ATE6 | non-specific serine/threonine protein kinase OS=Brassica campestris OX=3711 GN=BRAA07T28278Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28717 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26387 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010337 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12513, Sbi_jg45801 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20163 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022393 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00027, Sgl05097 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038715 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0016060 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30113580, pistato.v30278720 |
| Apiaceae | Apium graveolens | 1 | Ag7G01278 |
| Arecaceae | Cocos nucifera | 1 | scaffold002237G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707474 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.100.V1.1, AsparagusV1_06.99.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G27127 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35075.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022517m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g063090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0029 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g07740 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0207s00006.v1.0, Dusal.0207s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.71 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007563, Pov_00029448, Pov_00029449 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17189 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.811, CH01.823, Contig309.156 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062025 |
| Poaceae | Oryza coarctata | 1 | Oco06G023900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52794.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G087800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105996, Pt_Chr0107073, Pt_Chr0107513, Pt_Chr0108215 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G005770, Chr12G031570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G111900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038710-17776, gene_TRIDC4AG038710-72141 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS4B02G069200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb056540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15011, nbis-gene-15012 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g519 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG08.1867 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5955 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3390 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.180 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017325 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4741 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14076 |
| Salicaceae | Populus euphratica | 2 | populus_peu08945, populus_peu37687 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599114 |
| Solanaceae | Solanum chilense | 1 | SOLCI002767800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17751 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1083 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30820.v3.1 |