Basic Information
Locus ID:
BniB03g062660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 45384476 | 45385167 | + | BniB03g062660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 25,115.22 Da | 54.94 | 95.64 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 168 | 212 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 215 | 1.11E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 216 | 5.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 211 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 212 | 12.312242 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013746583.1 | probable E3 ubiquitin-protein ligase RHA4A [Brassica napus] | 0 |
| TrEMBL | A0A8X7W3D5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT5G37200.1, AT5G37220.1, AT5G37230.1, AT5G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10028290m.g.v1.0, Thhalv10028317m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g29000.v2.2, Sp6g06800.v2.2, Sp6g10420.v2.2 ... |
| Brassicaceae | Brassica nigra | 3 | BniB01g030310.2N, BniB01g030320.2N, BniB03g062660.2N |