Basic Information
Locus ID:
BniB03g061080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
SERK5
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 41161567 | 41165145 | + | BniB03g061080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 68,020.90 Da | 45.16 | 97.06 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 150 | 171 | 1.3 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 74 | 3.7E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 296 | 565 | 1.3E-45 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 273 | 570 | 2.56E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 211 | 5.1E-38 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 264 | 371 | 1.6E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 372 | 589 | 8.1E-69 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 210 | 3.6E-55 | IPR032675 |
| SMART | SM00220 | serkin_6 | 295 | 569 | 9.7E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 295 | 579 | 36.640289 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 418 | 430 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 301 | 323 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G13790.1 | somatic embryogenesis receptor-like kinase 4. | 0 |
| RefSeq | XP_013598949.1 | PREDICTED: somatic embryogenesis receptor kinase 4-like isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q9SKG5 | Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana OX=3702 GN=SERK4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8B6B4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology