Basic Information
Locus ID:
BniB03g057940.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 31493804 | 31496461 | + | BniB03g057940.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 48,510.39 Da | 42.07 | 94.06 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 24 | 65 | 4.6E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 98 | 261 | 1.18E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 81 | 1.96E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 70 | 1.7E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 71 | 280 | 3.7E-7 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80960.3 | F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_013591087.1 | PREDICTED: putative F-box protein At1g67390 [Brassica oleracea var. oleracea] | 0 |
| Q9FYF4 | Putative F-box protein At1g67390 OS=Arabidopsis thaliana OX=3702 GN=At1g67390 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8B505 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016023 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G67390.1, AT1G78470.1, AT1G80960.2, AT3G43410.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10002355m.g.v1.0, Thhalv10002356m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g05910.v2.2, Sp2g01400.v2.2, Sp4g04880.v2.2 ... |
| Brassicaceae | Brassica nigra | 25 | BniB01g033320.2N, BniB02g037670.2N, BniB03g057940.2N ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28740 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3233_chr01_+ |