Basic Information
Locus ID:
BniB03g056020.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 30292993 | 30294482 | - | BniB03g056020.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 24,802.38 Da | 62.37 | 51.41 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 123 | 205 | 5.15434E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 125 | 193 | 3.0E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 109 | 218 | 3.09E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 119 | 211 | 3.9E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 124 | 200 | 7.8E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 209 | 12.526224 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_018508254.1 | nuclear speckle RNA-binding protein A isoform X2 [Brassica rapa] | 0 |
| A1A6K6 | Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1 | 0 | |
| TrEMBL | A0A565B1L4 | RRM domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS5986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology