Basic Information
Locus ID:
BniB03g054460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 29356800 | 29359951 | - | BniB03g054460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 108,142.09 Da | 31.74 | 104.58 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 705 | 976 | 2.20401E-160 | - |
| Pfam | PF13855 | Leucine rich repeat | 488 | 547 | 2.0E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 74 | 6.1E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 176 | 194 | 0.89 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 700 | 974 | 3.2E-43 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 466 | 486 | 2.0 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 560 | 596 | 2.1E-7 | IPR025875 |
| SUPERFAMILY | SSF52047 | RNI-like | 81 | 437 | 3.14E-62 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 690 | 974 | 4.32E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 394 | 623 | 4.65E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 148 | 9.5E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 349 | 630 | 2.5E-78 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 776 | 984 | 2.4E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 149 | 233 | 2.6E-18 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 662 | 775 | 3.3E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 234 | 339 | 7.5E-29 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 368 | 391 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 486 | 510 | 40.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 699 | 974 | 1.5E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 558 | 582 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 271 | 294 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 343 | 367 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 295 | 319 | 81.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 699 | 975 | 37.092575 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 369 | 390 | 7.034293 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 820 | 832 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_009106236.1 | receptor protein kinase CLAVATA1 [Brassica rapa] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A397YRY6 | Protein kinase domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_G03381 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology