Basic Information
Locus ID:
BniB03g053390.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 28585061 | 28585450 | - | BniB03g053390.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 14,308.17 Da | 57.52 | 65.81 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 13 | 57 | 1.00106E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 15 | 55 | 4.7E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 68 | 5.5E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 69 | 2.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 15 | 55 | 3.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 15 | 56 | 13.492482 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 30 | 39 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013701450.1 | E3 ubiquitin-protein ligase RMA1H1 [Brassica napus] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7PM34 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_084427 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology