Basic Information
Locus ID:
BniB03g053190.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 28474314 | 28479567 | - | BniB03g053190.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 143,911.92 Da | 48.98 | 82.19 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 38 | 169 | 7.17326E-22 | - |
| CDD | cd12108 | Hr-like | 607 | 753 | 1.32134E-21 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1147 | 1190 | 2.85717E-21 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 39 | 171 | 4.1E-8 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 1020 | 1094 | 9.4E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1146 | 1189 | 2.4E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1195 | 1251 | 5.5E-25 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1085 | 1140 | 1.18E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1012 | 1077 | 1.01E-12 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1140 | 1195 | 1.32E-8 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 33 | 189 | 8.9E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1141 | 1192 | 4.1E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1218 | 1254 | 3.8E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 600 | 785 | 2.1E-13 | - |
| SMART | SM00184 | ring_2 | 1062 | 1092 | 12.0 | IPR001841 |
| SMART | SM00184 | ring_2 | 1148 | 1189 | 9.4E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1013 | 1082 | 23.231583 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1084 | 1147 | 29.099232 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1148 | 1190 | 11.707369 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 898 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_013652415.2 | zinc finger protein BRUTUS-like At1g74770 isoform X2 [Brassica napus] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7TTP0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_084386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology