Basic Information
Locus ID:
BniB03g053170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK30
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 28465820 | 28467936 | - | BniB03g053170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 62,026.40 Da | 34.65 | 85.34 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 64 | 322 | 1.23455E-130 | - |
| Pfam | PF13499 | EF-hand domain pair | 369 | 430 | 8.3E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 441 | 504 | 5.4E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 67 | 323 | 2.7E-75 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 351 | 530 | 3.02E-45 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 62 | 331 | 2.43E-86 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 66 | 150 | 7.7E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 151 | 331 | 5.2E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 332 | 507 | 3.0E-52 | - |
| SMART | SM00054 | efh_1 | 442 | 470 | 5.9E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 370 | 398 | 3.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 478 | 506 | 4.2E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 65 | 323 | 8.0E-98 | IPR000719 |
| SMART | SM00054 | efh_1 | 406 | 434 | 9.3E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 402 | 437 | 10.245409 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 438 | 473 | 14.987627 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 65 | 323 | 48.781395 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 474 | 509 | 13.034948 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 366 | 401 | 14.094975 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 415 | 427 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 185 | 197 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 71 | 94 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 379 | 391 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 487 | 499 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 451 | 463 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 45 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74740.1 | calcium-dependent protein kinase 30. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_013589734.1 | PREDICTED: calcium-dependent protein kinase 30 [Brassica oleracea var. oleracea] | 0 |
| Q9SSF8 | Calcium-dependent protein kinase 30 OS=Arabidopsis thaliana OX=3702 GN=CPK30 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6GG12 | Calcium-dependent protein kinase 30 OS=Brassica oleracea OX=3712 GN=BOLC6T39913H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology