Basic Information
Locus ID:
BniB03g051110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 27269013 | 27270257 | + | BniB03g051110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 41,076.76 Da | 53.48 | 88.60 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 238 | 294 | 7.9E-7 | IPR013187 |
| Pfam | PF00646 | F-box domain | 6 | 46 | 4.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 74 | 8.9E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 46 | 1.3E-6 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 4.7E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 107 | 223 | 1.5E-12 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 53 | 11.299088 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19930.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009137026.1 | F-box/kelch-repeat protein At4g19930 [Brassica rapa] | 0 |
| O49420 | F-box/kelch-repeat protein At4g19930 OS=Arabidopsis thaliana OX=3702 GN=At4g19930 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7PX86 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_077666 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |