Basic Information
Locus ID:
BniB03g050960.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 27171730 | 27176246 | - | BniB03g050960.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 80,658.00 Da | 40.70 | 83.67 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 353 | 550 | 2.80417E-132 | - |
| CDD | cd18787 | SF2_C_DEAD | 561 | 690 | 6.33262E-59 | - |
| CDD | cd11660 | SANT_TRF | 7 | 57 | 6.49837E-21 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 574 | 682 | 1.8E-28 | IPR001650 |
| Pfam | PF00538 | linker histone H1 and H5 family | 129 | 189 | 2.3E-8 | IPR005818 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 6 | 56 | 1.9E-7 | IPR017930 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 373 | 534 | 9.7E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 417 | 702 | 2.34E-72 | IPR027417 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 3 | 63 | 6.5E-15 | IPR009057 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 124 | 203 | 2.18E-11 | IPR036390 |
| Gene3D | G3DSA:3.40.50.300 | - | 338 | 555 | 8.8E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 124 | 208 | 1.2E-10 | IPR036388 |
| Gene3D | G3DSA:1.10.246.220 | - | 8 | 85 | 1.4E-18 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 556 | 721 | 4.1E-57 | IPR027417 |
| SMART | SM00526 | h15plus2 | 125 | 190 | 3.4E-15 | IPR005818 |
| SMART | SM00487 | ultradead3 | 367 | 564 | 1.7E-55 | IPR014001 |
| SMART | SM00717 | sant | 4 | 59 | 3.0E-7 | IPR001005 |
| SMART | SM00490 | helicmild6 | 601 | 682 | 2.9E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 348 | 376 | 9.921339 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 560 | 721 | 25.541737 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 379 | 549 | 28.22069 | IPR014001 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 1 | 57 | 8.060413 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 1 | 62 | 13.238972 | IPR017930 |
| ProSiteProfiles | PS51504 | Linker histone H1/H5 globular (H15) domain profile. | 127 | 201 | 22.031662 | IPR005818 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 495 | 503 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 231 | - | - |
| Coils | Coil | Coil | 247 | 267 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72730.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_013614964.1 | PREDICTED: eukaryotic initiation factor 4A-3 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q9CAI7 | Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W0U7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology