Basic Information
Locus ID:
BniB03g050380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 26857721 | 26858722 | - | BniB03g050380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 36,779.65 Da | 61.07 | 74.08 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 172 | 215 | 5.661E-18 | - |
| Pfam | PF13639 | Ring finger domain | 172 | 215 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 220 | 1.59E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 220 | 9.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 173 | 214 | 4.8E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 169 | 223 | 0.0055 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 173 | 215 | 13.212175 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 306 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048592138.1 | RING-H2 finger protein ATL54-like [Brassica napus] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7W1N6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014964 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology