Basic Information
Locus ID:
BniB03g049870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 26430120 | 26431700 | + | BniB03g049870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 48,767.17 Da | 75.44 | 79.28 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 14 | 164 | 6.24796E-54 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 234 | 277 | 2.56359E-25 | - |
| Pfam | PF13639 | Ring finger domain | 234 | 277 | 5.7E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 77 | 143 | 2.0E-8 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 82 | 163 | 5.36E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 286 | 1.12E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 282 | 8.3E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 21 | 156 | 8.6E-25 | - |
| SMART | SM00184 | ring_2 | 235 | 276 | 1.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 277 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 422 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_009105862.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Brassica rapa] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W1K9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014919 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology