Basic Information
Locus ID:
BniB03g049650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 26255942 | 26259134 | + | BniB03g049650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 69,071.35 Da | 39.90 | 98.74 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 309 | 580 | 2.91996E-164 | - |
| Pfam | PF13855 | Leucine rich repeat | 95 | 154 | 2.3E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 8.1E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 304 | 575 | 8.0E-44 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 194 | 2.04E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 282 | 578 | 6.97E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 380 | 597 | 6.7E-71 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 213 | 3.8E-62 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 272 | 379 | 6.6E-39 | - |
| SMART | SM00220 | serkin_6 | 303 | 577 | 3.8E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 303 | 590 | 35.862919 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 309 | 331 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 426 | 438 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_018453092.1 | PREDICTED: somatic embryogenesis receptor kinase 1-like [Raphanus sativus] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0KYW5 | somatic embryogenesis receptor kinase 1-like OS=Raphanus sativus OX=3726 GN=LOC108824216 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology