Basic Information
Locus ID:
BniB03g048490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 25481552 | 25483660 | + | BniB03g048490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 53,803.34 Da | 56.47 | 63.27 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 241 | 265 | 9.2E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 286 | 310 | 5.8E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 321 | 343 | 1.7E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 235 | 266 | 2.75E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 280 | 311 | 1.33E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 233 | 269 | 2.9E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 277 | 314 | 1.5E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 315 | 350 | 2.8E-9 | - |
| SMART | SM00547 | zf_4 | 321 | 345 | 1.4E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 243 | 267 | 1.3E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 288 | 312 | 2.5E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 286 | 315 | 9.291992 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 319 | 348 | 9.258115 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 241 | 270 | 9.619466 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 290 | 309 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 323 | 342 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 245 | 264 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 435 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_018453195.1 | PREDICTED: zinc finger protein VAR3, chloroplastic [Raphanus sativus] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7W1S9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology