Basic Information
Locus ID:
BniB03g046710.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 24459400 | 24460164 | - | BniB03g046710.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 28,656.60 Da | 45.05 | 98.11 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 49 | 78 | 7.4E-9 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 106 | 7.42E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 140 | 3.3E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 49 | 103 | 0.007 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 104 | 10.409105 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 68 | 77 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 39 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009105477.1 | uncharacterized protein LOC103831330 [Brassica rapa] | 0 |
| TrEMBL | A0A3P6BS84 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA07T31152Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology