Basic Information
Locus ID:
BniB03g046620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
LRR receptor-like serine threonine-protein kinase RPK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 24402053 | 24403669 | - | BniB03g046620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 59,844.80 Da | 39.26 | 96.90 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 265 | 533 | 3.74665E-87 | - |
| Pfam | PF00069 | Protein kinase domain | 264 | 528 | 1.0E-44 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 69 | 2.9E-14 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 239 | 530 | 2.97E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 169 | 5.1E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 335 | 536 | 2.7E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 220 | 334 | 1.0E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 170 | 1.2E-29 | IPR032675 |
| SMART | SM00220 | serkin_6 | 259 | 533 | 1.4E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 259 | 533 | 39.113739 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 265 | 287 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 379 | 391 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69270.1 | receptor-like protein kinase 1. RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. | 0 |
| RefSeq | NP_177087.1 | receptor-like protein kinase 1 [Arabidopsis thaliana] | 0 |
| Q9ZRF9 | Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana OX=3702 GN=RPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B613 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015885 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology