Basic Information
Locus ID:
BniB03g046210.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 24155858 | 24157375 | + | BniB03g046210.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 58,499.14 Da | 36.38 | 86.38 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14392 | Zinc knuckle | 152 | 193 | 4.1E-7 | IPR025836 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 14 | 125 | 3.4E-16 | IPR025558 |
| Pfam | PF13639 | Ring finger domain | 458 | 501 | 5.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 458 | 504 | 1.03E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 457 | 501 | 1.7E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 459 | 500 | 4.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 459 | 501 | 12.725326 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68845.1 | 0 | |
| RefSeq | XP_022560162.2 | uncharacterized protein LOC106403509 [Brassica napus] | 0 |
| TrEMBL | A0A3P6GX38 | RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC6T39324H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G68845.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019819m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g23960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g046210.2N |