Basic Information
Locus ID:
BniB03g045440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 23646684 | 23650844 | - | BniB03g045440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 86,762.86 Da | 55.24 | 79.56 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 644 | 687 | 1.67616E-20 | - |
| CDD | cd12108 | Hr-like | 310 | 417 | 3.49511E-9 | - |
| Pfam | PF13639 | Ring finger domain | 644 | 686 | 7.2E-9 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 692 | 748 | 1.8E-20 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 643 | 695 | 4.89E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 638 | 689 | 1.5E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 294 | 458 | 5.0E-6 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 715 | 751 | 1.9E-12 | - |
| SMART | SM00184 | ring_2 | 645 | 686 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 645 | 687 | 11.854899 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 578 | 644 | 9.76763 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 539 | 625 | 15.011475 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_013592641.1 | PREDICTED: uncharacterized protein LOC106300922 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9LG72 | RING-type domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q68_00046071 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology