Basic Information
Locus ID:
BniB03g045300.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 23601941 | 23603583 | + | BniB03g045300.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 30,825.35 Da | 32.89 | 81.16 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 33 | 96 | 2.9E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 20 | 104 | 7.52E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 25 | 99 | 2.7E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 30 | 99 | 1.8E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 103 | 11.400568 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67950.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_018446231.1 | PREDICTED: binding partner of ACD11 1-like isoform X4 [Raphanus sativus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W2Q8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015145 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology