Basic Information
Locus ID:
BniB03g044580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger (MYND type) family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 23213267 | 23214576 | + | BniB03g044580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 39,948.25 Da | 48.84 | 81.61 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 300 | 339 | 1.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 94 | 222 | 2.88E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 98 | 2.62E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 304 | 342 | 1.15E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 66 | 243 | 9.5E-19 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 286 | 345 | 7.7E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 297 | 339 | 10.816236 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_018442641.1 | PREDICTED: F-box protein At1g67340 [Raphanus sativus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W240 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015204 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology