halophFGD

Basic Information

Locus ID: BniB03g044320.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B3	23040638	23042023	-	BniB03g044320.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.19	52,792.93 Da	36.99	80.91	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01535	PPR repeat	92	114	0.027	IPR002885
Pfam	PF01535	PPR repeat	159	184	0.0031	IPR002885
Pfam	PF14432	DYW family of nucleic acid deaminases	343	450	3.4E-17	IPR032867
Pfam	PF01535	PPR repeat	259	284	0.067	IPR002885
Pfam	PF01535	PPR repeat	188	216	0.012	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	89	249	2.0E-23	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	188	220	4.8E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	92	118	0.0029	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	185	219	9.54735	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G29710.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_013589581.1	PREDICTED: pentatricopeptide repeat-containing protein At1g29710, mitochondrial [Brassica oleracea var. oleracea]
Swiss-Prot	Q9C6G2	Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H67 PE=3 SV=1
TrEMBL	A0A8X7W5H1	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015908 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11928, jg17978, jg28682
Amaranthaceae	Atriplex hortensis	2	Ah016922, Ah035473
Amaranthaceae	Beta vulgaris	2	BVRB_2g026760, BVRB_7g158630
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16535, Sbi_jg21898, Sbi_jg29540, Sbi_jg61058
Amaranthaceae	Salicornia europaea	2	Seu_jg15850, Seu_jg22817
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008484, GOSA_00020591
Amaranthaceae	Suaeda glauca	6	Sgl14623, Sgl14658, Sgl19826, Sgl63150, Sgl63285, Sgl67764
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010815, gene:ENSEOMG00000018661 ... gene:ENSEOMG00000021178, gene:ENSEOMG00000029189, gene:ENSEOMG00000032806, gene:ENSEOMG00000045641, gene:ENSEOMG00000050465
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.2BG0021120, CQ.Regalona.r1.8AG0007470 ... CQ.Regalona.r1.8BG0007710
Anacardiaceae	Pistacia vera	2	pistato.v30252580, pistato.v30266050
Apiaceae	Apium graveolens	3	Ag10G02934, Ag5G01682, Ag6G02444
Arecaceae	Cocos nucifera	2	COCNU_05G006810, COCNU_06G004840
Arecaceae	Phoenix dactylifera	3	gene-LOC103703367, gene-LOC103721816, gene-LOC120111010
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.833.V1.1, AsparagusV1_03.113.V1.1 ... AsparagusV1_04.3101.V1.1, AsparagusV1_05.2923.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G11792, Ftri3G25911, Ftri8G13403
Brassicaceae	Arabidopsis thaliana	5	AT1G29710.1, AT2G15690.1, AT2G25580.1, AT2G34370.1 ... AT4G32450.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10000083m.g.v1.0, Thhalv10002347m.g.v1.0 ... Thhalv10010282m.g.v1.0, Thhalv10017960m.g.v1.0, Thhalv10022696m.g.v1.0, Thhalv10024867m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g28930.v2.2, Sp4g04980.v2.2, Sp5g08390.v2.2 ... Sp7g30240.v2.2
Brassicaceae	Brassica nigra	6	BniB02g012270.2N, BniB02g024000.2N, BniB03g044320.2N ... BniB05g005620.2N, BniB05g018660.2N, BniB06g065730.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2310, Ceq07G2155
Casuarinaceae	Casuarina glauca	2	Cgl04G2512, Cgl07G2385
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g12390, gene.Cymno09g07370
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g12800, gene.Thate03g05310
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG03.2581, evm.TU.LG06.518, evm.TU.LG06.969 ... evm.TU.LG07.1212
Plantaginaceae	Plantago ovata	3	Pov_00013971, Pov_00032916, Pov_00035357
Plumbaginaceae	Limonium bicolor	1	Lb1G05018
Poaceae	Echinochloa crus-galli	7	AH02.3105, AH07.3300, BH02.3178, BH05.1186, CH01.2673 ... CH05.1524, CH07.3188
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_5AG0361190, gene-QOZ80_5BG0409610 ... gene-QOZ80_5BG0415660
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0094040.1.CDS1 ... HORVU.MOREX.r3.3HG0287400.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015107, gene-QYE76_055368
Poaceae	Oryza coarctata	4	Oco01G019670, Oco02G020140, Oco07G000150, Oco08G001340
Poaceae	Oryza sativa	3	LOC_Os01g53610.1, LOC_Os02g05800.1, LOC_Os04g09530.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G269300, gene-BS78_09G256800, gene-BS78_K136900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0604933, Pt_Chr0605236
Poaceae	Sporobolus alterniflorus	8	Chr02G010230, Chr04G005840, Chr05G006070, Chr05G023160 ... Chr08G015780, Chr0G005990, Chr18G015990, Chr22G000050
Poaceae	Thinopyrum elongatum	2	Tel1E01G731600, Tel3E01G459400
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG063620, gene_TRIDC1BG072850 ... gene_TRIDC3AG041330, gene_TRIDC3BG046620
Poaceae	Triticum aestivum	6	TraesCS1A02G433400.1.cds1, TraesCS1B02G469300.1.cds1 ... TraesCS1D02G443000.1.cds1, TraesCS3A02G278400.1, TraesCS3B02G312600.1, TraesCS3D02G278700.1
Poaceae	Zea mays	3	Zm00001eb153890_P001, Zm00001eb297450_P001 ... Zm00001eb345230_P002
Poaceae	Zoysia japonica	1	nbis-gene-24710
Poaceae	Zoysia macrostachya	2	Zma_g28915, Zma_g8604
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.231, evm.TU.LG14.1833
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g06060, gene.Posoc08g00950, gene.Posoc10g06760
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.105, evm.TU.Scaffold_1_RagTag.2103 ... evm.TU.Scaffold_2_RagTag.309, evm.TU.Scaffold_4_RagTag.1852
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-4881, nbisL1-mrna-7192
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16958, nbisL1-mrna-5090
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-14473, nbisL1-mrna-3432, nbisL1-mrna-4636 ... nbisL1-mrna-9829
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000005l.133, add.evm.TU.utg000008l.400 ... add.evm.TU.utg000009l.280, add.evm.TU.utg000016l.80
Rhizophoraceae	Kandelia obovata	2	Maker00000315, Maker00005524
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14832, nbisL1-mrna-16882, nbisL1-mrna-17708
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-22036, nbisL1-mrna-6077
Salicaceae	Populus euphratica	2	populus_peu27387, populus_peu33708
Solanaceae	Lycium barbarum	4	gene-LOC132599047, gene-LOC132600830, gene-LOC132620301 ... gene-LOC132642075
Solanaceae	Solanum chilense	3	SOLCI002114100, SOLCI004114400, SOLCI005040000
Solanaceae	Solanum pennellii	3	gene-LOC107005583, gene-LOC107018492, gene-LOC107026572
Tamaricaceae	Reaumuria soongarica	3	STRG.2821_chr02_-, STRG.9762_chr06_-, gene_14860
Tamaricaceae	Tamarix chinensis	3	TC01G4056, TC12G1188, TC12G1968
Zosteraceae	Zostera marina	2	Zosma01g32350.v3.1, Zosma03g03220.v3.1