Basic Information
Locus ID:
BniB03g043640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 22466362 | 22466823 | - | BniB03g043640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 16,878.98 Da | 26.89 | 74.58 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13499 | EF-hand domain pair | 86 | 147 | 5.7E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 14 | 77 | 4.9E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 13 | 149 | 1.26E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 3 | 80 | 9.8E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 81 | 152 | 1.7E-25 | - |
| SMART | SM00054 | efh_1 | 86 | 114 | 5.4E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 15 | 43 | 1.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 122 | 150 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 51 | 79 | 0.0013 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 118 | 153 | 13.760229 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 11 | 46 | 16.215025 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 47 | 81 | 10.329096 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 82 | 117 | 16.215025 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 24 | 36 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 95 | 107 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 131 | 143 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37770.1 | EF hand calcium-binding protein family. Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). Also regulates nitric oxide levels. | 0 |
| RefSeq | XP_009105203.1 | calcium-binding protein CML24 [Brassica rapa] | 0 |
| P25070 | Calcium-binding protein CML24 OS=Arabidopsis thaliana OX=3702 GN=CML24 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8B5A2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology