Basic Information
Locus ID:
BniB03g043490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 22339810 | 22342799 | + | BniB03g043490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 102,635.96 Da | 37.39 | 95.06 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 596 | 870 | 4.3253E-94 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 329 | 364 | 6.1E-6 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 64 | 2.7E-6 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 415 | 432 | 1.7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 93 | 150 | 6.7E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 591 | 865 | 7.8E-46 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 303 | 2.89E-48 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 578 | 881 | 6.79E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 330 | 436 | 2.87E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 668 | 883 | 6.9E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 556 | 667 | 5.5E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 325 | 1.0E-89 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 327 | 451 | 6.5E-37 | IPR032675 |
| SMART | SM00220 | serkin_6 | 590 | 871 | 9.4E-46 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 138 | 162 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 413 | 435 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 213 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 114 | 137 | 3.0E-6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 113 | 350.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 116 | 137 | 7.919874 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 590 | 871 | 39.636696 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 596 | 628 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 715 | 727 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 468 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_022544807.2 | receptor protein kinase TMK1 [Brassica napus] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TTQ7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_083545 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology