Basic Information
Locus ID:
BniB03g043170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Inositol polyphosphate phosphatase, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 22172049 | 22178360 | - | BniB03g043170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 123,532.60 Da | 43.34 | 79.20 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09074 | INPP5c | 545 | 889 | 4.89454E-104 | - |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 550 | 880 | 1.6E-15 | IPR005135 |
| SUPERFAMILY | SSF56219 | DNase I-like | 523 | 908 | 7.05E-60 | IPR036691 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 145 | 526 | 3.14E-29 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 526 | 918 | 6.2E-103 | IPR036691 |
| Gene3D | G3DSA:2.130.10.10 | - | 320 | 525 | 1.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 115 | 319 | 7.4E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 441 | 478 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 439 | 360.0 | IPR001680 |
| SMART | SM00128 | i5p_5 | 543 | 895 | 1.4E-107 | IPR000300 |
| SMART | SM00320 | WD40_4 | 179 | 217 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 480 | 517 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 261 | 0.051 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 55 | - | - |
| Coils | Coil | Coil | 1091 | 1111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65580.1 | Endonuclease/exonuclease/phosphatase family protein. | 0 |
| RefSeq | XP_022544784.2 | type II inositol polyphosphate 5-phosphatase 15-like isoform X2 [Brassica napus] | 0 |
| Q84W55 | Type II inositol polyphosphate 5-phosphatase 15 OS=Arabidopsis thaliana OX=3702 GN=IP5P15 PE=1 SV=2 | 0 | |
| TrEMBL | M4CIT6 | IPPc domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology