Basic Information
Locus ID:
BniB03g042840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger (MYND type) family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 21989726 | 21991006 | - | BniB03g042840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 39,947.30 Da | 55.54 | 82.15 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 300 | 339 | 1.0E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 305 | 342 | 1.26E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 32 | 98 | 3.92E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 96 | 224 | 2.75E-14 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 74 | 243 | 7.3E-20 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 287 | 346 | 1.6E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 297 | 339 | 10.712531 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 372 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_048616138.1 | F-box protein At1g67340-like [Brassica napus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B336 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015347 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology