Basic Information
Locus ID:
BniB03g042830.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the eIF-2B alpha beta delta subunits family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 21983980 | 21985113 | - | BniB03g042830.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 42,950.61 Da | 51.50 | 91.78 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 214 | 330 | 2.3E-16 | IPR013187 |
| Pfam | PF00646 | F-box domain | 19 | 58 | 3.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 71 | 8.37E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 55 | 7.8E-6 | - |
| SMART | SM00256 | fbox_2 | 19 | 59 | 3.9E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 119 | 343 | 1.1E-38 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 58 | 9.68293 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15660.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009105605.1 | putative F-box protein At1g26515 [Brassica rapa] | 0 |
| Q9LFW0 | Putative F-box protein At5g15660 OS=Arabidopsis thaliana OX=3702 GN=At5g15660 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8B498 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G47800.1, AT1G47810.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015726m.g.v1.0, Thhalv10019453m.g.v1.0 |
| Brassicaceae | Brassica nigra | 5 | BniB03g042830.2N, BniB05g023080.2N, BniB05g023090.2N ... |