Basic Information
Locus ID:
BniB03g041870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
AT3G13670 (E 0.0) protein kinase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 21309015 | 21310686 | - | BniB03g041870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 20,719.57 Da | 47.82 | 82.87 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 56 | 163 | 7.1E-8 | IPR000719 |
| Pfam | PF03552 | Cellulose synthase | 19 | 60 | 4.6E-8 | IPR005150 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 56 | 168 | 7.38E-23 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 47 | 110 | 2.1E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 111 | 176 | 2.1E-11 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 35 | 181 | 11.651377 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 150 | 162 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13670.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_009146466.2 | casein kinase 1-like protein HD16 [Brassica rapa] | 0 |
| Q852L0 | Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SG87 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025446 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2765.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB03g041870.2N |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G02423, Lb5G27269, Lb6G32216, Lb6G32217 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.39 |