Basic Information
Locus ID:
BniB03g041600.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
nuclear transport factor 2 (NTF2) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 21085566 | 21094044 | - | BniB03g041600.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 93,680.09 Da | 49.30 | 64.58 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 443 | 560 | 9.48701E-31 | IPR018222 |
| CDD | cd00590 | RRM_SF | 258 | 332 | 4.22509E-11 | - |
| CDD | cd00780 | NTF2 | 11 | 130 | 2.92001E-33 | IPR018222 |
| CDD | cd00590 | RRM_SF | 690 | 764 | 8.93596E-12 | - |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 13 | 128 | 2.8E-23 | IPR002075 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 443 | 558 | 8.8E-23 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 258 | 316 | 4.0E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 690 | 754 | 5.2E-10 | IPR000504 |
| SUPERFAMILY | SSF54427 | NTF2-like | 11 | 129 | 1.17E-26 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 232 | 336 | 1.61E-15 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 443 | 559 | 7.4E-24 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 674 | 793 | 4.03E-17 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 393 | 1.4E-14 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 9 | 132 | 7.0E-27 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 662 | 831 | 7.2E-18 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 442 | 562 | 3.3E-24 | - |
| SMART | SM00360 | rrm1_1 | 257 | 332 | 5.5E-11 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 689 | 764 | 4.7E-12 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 688 | 768 | 12.611502 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 256 | 336 | 11.298236 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 442 | 558 | 26.580889 | IPR018222 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 12 | 128 | 28.197966 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 416 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69250.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_018445481.1 | PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Raphanus sativus] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W390 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology