Basic Information
Locus ID:
BniB03g041250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 20865548 | 20866797 | - | BniB03g041250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 36,930.59 Da | 41.62 | 94.97 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 48 | 1.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 60 | 1.03E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 52 | 1.8E-7 | - |
| SMART | SM00256 | fbox_2 | 15 | 55 | 0.002 | IPR001810 |
| SMART | SM00579 | 9598neu4hmm | 244 | 318 | 5.1E-4 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 64 | 10.451268 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59000.2 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_048615846.1 | putative F-box protein At5g40050 [Brassica napus] | 0 |
| Q3E7J7 | Putative F-box/LRR-repeat protein At5g25860 OS=Arabidopsis thaliana OX=3702 GN=At5g25860 PE=4 SV=1 | 0 | |
| TrEMBL | A0A816QHR2 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C06P36670.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25860.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10001423m.g.v1.0, Thhalv10025492m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g041250.2N |