Basic Information
Locus ID:
BniB03g040680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 20514019 | 20515392 | - | BniB03g040680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 32,744.90 Da | 25.61 | 79.04 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11715 | Nucleoporin Nup120/160 | 20 | 52 | 2.9E-6 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 125 | 160 | 8.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 165 | 199 | 0.0024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 262 | 3.04E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 84 | 2.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 85 | 279 | 5.5E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 122 | 160 | 7.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 37 | 0.65 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 114 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 200 | 2.9E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 5 | 46 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 170 | 199 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 5 | 37 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 169 | 10.14085 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 147 | 161 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 187 | 201 | 1.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 24 | 38 | 1.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 147 | 161 | 1.4E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40880.2 | - | 0 |
| RefSeq | XP_018479748.1 | PREDICTED: zinc finger CCCH domain-containing protein 59-like, partial [Raphanus sativus] | 0 |
| Q9FKR9 | Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana OX=3702 GN=ZFWD3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0N770 | zinc finger CCCH domain-containing protein 59-like OS=Raphanus sativus OX=3726 GN=LOC108850770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology