Basic Information
Locus ID:
BniB03g040050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 20080779 | 20083941 | - | BniB03g040050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 68,503.53 Da | 38.41 | 96.70 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 304 | 575 | 1.29531E-163 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 62 | 8.0E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 299 | 570 | 4.0E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 277 | 573 | 5.74E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 189 | 2.61E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 375 | 592 | 2.4E-71 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 267 | 374 | 6.5E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 208 | 2.4E-62 | IPR032675 |
| SMART | SM00220 | serkin_6 | 298 | 572 | 7.1E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 298 | 585 | 36.074928 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 304 | 326 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 421 | 433 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_013728572.1 | somatic embryogenesis receptor kinase 1 [Brassica napus] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7W3J0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015619 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology